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97 packages found
JBrowse 2 code shared between web-app type products
Node program to run canvasXpress in the command line
JBrowse 2 code shared between products but not used by plugins
Read Tabix-indexed files, supports both .tbi and .csi indexes
Parser for BAM and BAM index (bai) files
A general purpose module for parsing FASTA files
JBrowse 2 text indexing for desktop
Streaming Visualization Library
RNA-Seq Plots is a collection of React.js components designed to visualise RNA sequencing data. The package includes a Volcano Plot and a Principal Component Analysis (PCA) plot, both of which are powered by Highcharts.
Chromosome visualization for the web
Volcano Plot is a React.js component powered by Highcharts, designed to visualise RNA sequencing data and identify statistically significant genes. It allows dynamic threshold adjustment for a comprehensive and interactive data analysis experience.
The 'pca-plot' package is a way to check seq data quality. It visualises the data conditionally in a 2D or 3D plot (dependent on the number of PCs selected), where each point represents a sample. The distance between the points is a measure of the similar
read CRAM files with pure Javascript
Chromosomal region class used in GIVE, supporting some basic region operations
High performance streaming Variant Call Format (VCF) parser in pure JavaScript
Program to run canvasXpress with node
Parser for BAM and BAM index (bai) files
Basic kaplan-meier methods
Node program to run canvasXpress with react