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111 packages found

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igv

Embeddable genomic visualization component based on the Integrative Genomics Viewer

igvteam
published version 3.4.0, 19 days ago12 dependents licensed under $MIT
41,361

@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 3 years ago17 dependents licensed under $MIT
26,169

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 6.0.4, 24 days ago17 dependents licensed under $MIT
14,322

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, a year ago55 dependents licensed under $MIT
10,072

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.9, 3 months ago24 dependents licensed under $MIT
7,776

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.7, a month ago3 dependents licensed under $MIT
6,606

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 3.0.5, 24 days ago24 dependents licensed under $MIT
8,111

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 3.0.1, a month ago21 dependents licensed under $MIT
6,283

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 4.0.6, 21 days ago15 dependents licensed under $MIT
7,187

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 5.0.5, a month ago0 dependents licensed under $MIT
7,356

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.6, a month ago1 dependents licensed under $MIT
5,451

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 7.0.5, 8 days ago17 dependents licensed under $MIT
6,469

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.5.1, 13 days ago47 dependents licensed under $Apache-2.0
4,146

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 2.0.12, 8 days ago17 dependents licensed under $MIT
5,811

@gmod/ucsc-hub

Read and write UCSC track and assembly hub files in node or the browser

cmdcolin
published version 2.0.3, 16 days ago3 dependents licensed under $MIT
5,513

gtf-nostream

utilities to read GTF data

cmdcolin
published version 1.3.4, 9 months ago1 dependents licensed under $MIT
3,982

higlass

HiGlass Hi-C / genomic / large data viewer

pkerpedjiev
published version 1.13.6, 2 months ago20 dependents licensed under $MIT
2,870

@gmod/faidx

create indexed fasta files

cmdcolin
published version 1.0.6, a year ago0 dependents licensed under $MIT
3,503

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.5.1, 13 days ago3 dependents licensed under $Apache-2.0
2,636

ideogram

Chromosome visualization for the web

eweitz
published version 1.53.0, a month ago4 dependents licensed under $CC0-1.0
2,769